PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g074250.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 1178aa    MW: 128573 Da    PI: 5.1745
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g074250.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.7e-05402424223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +C +C+ +F++k++L +H+   H
  Solyc04g074250.1.1 402 QCDKCNVTFNNKDDLLQHQLFsH 424
                         8******************8777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-6279325IPR016177DNA-binding domain
PROSITE profilePS5015710.554401429IPR007087Zinc finger, C2H2
SMARTSM003550.0043401424IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280403424IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162447474IPR007087Zinc finger, C2H2
SMARTSM003551.2447469IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280449469IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1178 aa     Download sequence    Send to blast
MASVTVDSSS ATVPDGALQA ESIPTVDLRL LSQSELYSLS LCSPAAFNPC RDDDVIIPKI  60
DRSVFNESAG SRKQTYSRLR LAPAATASAS SAIRSRTPHL RNSPHPLQNP SPNNGPANSE  120
SSQIVTLLKQ LFGSGTQKNP TDLVPIRVDY SDSLSVPSHV PVPGLELANV GSIGQKRKRG  180
RPRKNENGVR VAEVKVDEVV KDIVVYQNVD DSDKEIMNKD GIPVDLAVLG ASVDPFGLEL  240
RRRTEGLGSA EELLGFLGRL NGQWGSTRKK RRIVDADDFG SMLPKSWKLL LSIKRKEGRS  300
WLHCRRYISP NGRQFGTCKE VSSYLLFLRG ERNENLPTYV NGSGTVEITN ACALTSDLRI  360
QDGGKKESSV FHNSSPAVGH GELQVLLNFG ELSEVQVGDL LQCDKCNVTF NNKDDLLQHQ  420
LFSHQRRKSR NGGQSITDGV IIRDGKFECQ FCHKTFEEKH RYNGHVGNHV KKQVKTVDGS  480
LPIKMGGGIE PVVPSGAMLR EPIMQDSVVL PRNLTENAGV ITDAGDNPAP TTKIQEDHME  540
TDNKLEAEGT SNGCHNQEGS SVSRSPISSN EKTCVDISKV IVGSNIEEPE QEGLLCSNDI  600
VDSCGVSMED GKFFPTVDES KVENGRSVDT DSTTVLCSNP SLPGGNSLIK ARQIPHTEDH  660
SGKNIDDMNG VSFLAETSKG NRYLKSSTGT PSCDKEGSTV DYVGVLSGCI GEHRPSSIMS  720
DIENKECGSL NSNDNKLIMK EDNNSIAQHL DKHVKDTAER DAVDVSACVL EELGQKKGDE  780
SSLLSPACDK NSEVESLIFN DLKTSAEEPK ISELQSVRSN IVGFTSSDNY AVKKVAASDT  840
EKEKSLAFCP LFPAMNARAS CAEDHDTKVY QSTLEGNDLQ RSANALFSTT NVPEASTKEY  900
TMHRSYNNSL KESKFDGLEH PRHHDLNVVF GNSHVDLSAN LNCTPFQLGM EETYGVQDNL  960
QKRLETDKHG EVGIDLSDSS FKGKTGDFGS NFNTVFPSQL WNEHKLNEVD NSGKKIITSF  1020
GCGDAKPNED VMAGSIWRVG VENVMQGGSA GNSTSVAQSS NCFQTYDVLS DKVPNLYGEN  1080
EKYNGNTGFD GLSSDRTGPV EYSFMSTQSS NSLQEEPRVL PYDVDIEQGF NSSFWLGKDN  1140
LMPNLAGSNQ VTMVIYMLPF CFAFLQKIHW MLECGWC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g074250.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238529.10.0uncharacterized protein LOC101267888 isoform X2
TrEMBLA0A3Q7G7E50.0A0A3Q7G7E5_SOLLC; Uncharacterized protein
STRINGSolyc04g074250.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78501619
Representative plantOGRP203579
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]