PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g072300.1.1
Common NameLOC101258651
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 161aa    MW: 18225.5 Da    PI: 7.5714
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g072300.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19e-182467148
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
                        ++y+GVr+++ +gr++AeIr p++   ++r++lg+f+taeeAa a++ 
  Solyc04g072300.1.1 24 TKYHGVRRRP-WGRYAAEIRNPNT---KQRHWLGTFDTAEEAALAYDI 67
                        69********.**********933...5******************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.79E-292482No hitNo description
PfamPF008476.1E-122466IPR001471AP2/ERF domain
PROSITE profilePS5103220.62583IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-272582IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-182583IPR016177DNA-binding domain
SMARTSM003807.4E-292589IPR001471AP2/ERF domain
PRINTSPR003672.4E-92637IPR001471AP2/ERF domain
PRINTSPR003672.4E-94864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MENITNTPKL HVRNLVRRSS RHSTKYHGVR RRPWGRYAAE IRNPNTKQRH WLGTFDTAEE  60
AALAYDISSI NFCGIENART NFVYPFSSFP SPYNNSPAPP SPPPQPLPPP PPSTPELEVV  120
ENKCMKIEMN DDINDDDESL VIASILQSFR YTNTLDKLSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1525741464Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g072300.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9145250.0S.lycopersicum DNA sequence from clone LE_HBa-149O17 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238505.11e-116ethylene-responsive transcription factor LEP-like
TrEMBLA0A3Q7G6U51e-115A0A3Q7G6U5_SOLLC; Uncharacterized protein
STRINGSolyc04g072300.1.11e-115(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-26ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]