PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g056320.1.1
Common NameLOC101055523
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 374aa    MW: 41648.2 Da    PI: 7.1774
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g056320.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.9e-06155176223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C  Cgk F+r  nL+ H+r H
  Solyc04g056320.1.1 155 FCDFCGKGFKRDANLRMHMRAH 176
                         6*******************99 PP

2zf-C2H211.70.00081242265123
                         EEETTTT.EEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                         y+C+ C+ ksFs   +Lk+H++ +
  Solyc04g056320.1.1 242 YSCTRCNkKSFSVLADLKSHLKHC 265
                         99*******************977 PP

3zf-C2H211.80.00074273289521
                         TTTEEESSHHHHHHHHH CS
             zf-C2H2   5 dCgksFsrksnLkrHir 21 
                          Cg+sFsrk+ L  H+ 
  Solyc04g056320.1.1 273 SCGTSFSRKDKLFGHMA 289
                         5**************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-6151177No hitNo description
PROSITE profilePS5015712.092154181IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-6154176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0024154176IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
SMARTSM0035570204237IPR015880Zinc finger, C2H2-like
SMARTSM0035514242264IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001264289IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355210270294IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSFTGDLRHL PPNTIGDDPM VPLLNLSAVQ TRMDSLQKFL SDSVNSNTLL GQHQMNMVSD  60
EITSAIHQII VNGAALLSSA QLTNPPPPPP PPPRPSSSAE LKINLKSNHK RSFPEFDRRD  120
FESKVEVLDE EEEDGGDWEI IELDAVELLA EHIHFCDFCG KGFKRDANLR MHMRAHGNQY  180
KTPEALAKPE KCIDSSNSNK RRRFSCPFIG CTRNKSHNKF RPLKSAICVK NHFKRSHCPK  240
MYSCTRCNKK SFSVLADLKS HLKHCGETKW KCSCGTSFSR KDKLFGHMAL FEGHMPAVET  300
APAIENEKDV GVDINGGSGN GLMDIRTGSD NGFLDRLMLD GFESIDSYCF QDLFESSSPN  360
GLNTVPNTTG WFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.82720.0callus| fruit| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g056320.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612440.0Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI038 mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001265961.10.0Hop-interacting protein THI038
TrEMBLG8Z2660.0G8Z266_SOLLC; Hop-interacting protein THI038
STRINGSolyc04g056320.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100002126
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.36e-77C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]