PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g054320.2.1
Common NameNITF
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 371aa    MW: 41763.5 Da    PI: 5.1939
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g054320.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.48.8e-1085121439
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLe 39 
                         +k+ rr+++NReAAr+sR+RKka++++Le+ k k L+
  Solyc04g054320.2.1  85 DKVRRRLAQNREAARKSRLRKKAYVQQLENsKLKLLQ 121
                         799**************************82444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.1E-781129No hitNo description
SMARTSM003381.2E-482145IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.96784128IPR004827Basic-leucine zipper domain
PfamPF001701.3E-685121IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.93E-686127No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
PfamPF141448.5E-30173247IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MNSSTYTQFV ASKRMGICDP IHQIGMWGDF KGSSFPDSLI LEVENCLENE MPIMEKRLEN  60
EIEEPSQVTV GTSNRYEPET TKRIDKVRRR LAQNREAARK SRLRKKAYVQ QLENSKLKLL  120
QLEQELERNR QQGLYVGDGL DASQIGCSGT ANSGIASFEM EYGHWVEEQD RQTDDLRNAL  180
NSQMGEIELR ILVEDCLNHY FDLFRLKATA ANADVLYLMS GTWKTSAERF FLWIGGFRPS  240
ELLKVLTPHV EPLSDQQIQE VSNLTQSCQQ AEDALSQGMV KLHQILAEAV AAGTLGEGVI  300
LPQMTATIEK LEALVRFVNQ ADHLRQETLL QMSCILAPHQ SAQGLLALGD YFKRLRALSS  360
LWAGRLSEPA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.34990.0cell culture| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g054320.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3877850.0Lycopersicon esculentum leucine-zipper transcription factor (NITF) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234614.10.0leucine-zipper transcription factor
RefseqXP_010319687.10.0leucine-zipper transcription factor isoform X1
RefseqXP_025886212.10.0leucine-zipper transcription factor isoform X1
RefseqXP_025886213.10.0leucine-zipper transcription factor isoform X1
SwissprotP142320.0TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBLQ94EX60.0Q94EX6_SOLLC; Leucine-zipper transcription factor
STRINGSolyc04g054320.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Representative plantOGRP26791132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-142bZIP family protein
Publications ? help Back to Top
  1. Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J
    A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems.
    Plant Mol. Biol., 2000. 42(5): p. 679-88
    [PMID:10809441]
  2. Johnson C,Boden E,Desai M,Pascuzzi P,Arias J
    In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor.
    Plant J., 2001. 28(2): p. 237-43
    [PMID:11722767]
  3. Katagiri F,Seipel K,Chua NH
    Identification of a novel dimer stabilization region in a plant bZIP transcription activator.
    Mol. Cell. Biol., 1992. 12(11): p. 4809-16
    [PMID:1406663]
  4. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  5. Miao ZH,Lam E
    Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants.
    Plant J., 1995. 7(6): p. 887-96
    [PMID:7599649]
  6. Pascuzzi P,Hamilton D,Bodily K,Arias J
    Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor.
    J. Biol. Chem., 1998. 273(41): p. 26631-7
    [PMID:9756903]