PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g051360.2.1
Common NameLOC101263697
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 304aa    MW: 33804.1 Da    PI: 7.0166
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g051360.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.4e-21136185255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a+++a++ ++g
  Solyc04g051360.2.1 136 RYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAEGAARAYDEAALTFRG 185
                         7********.**********76....35***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.4E-37136199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-32136194IPR001471AP2/ERF domain
PROSITE profilePS5103225.172136193IPR001471AP2/ERF domain
PfamPF008471.2E-13136185IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-22136194IPR016177DNA-binding domain
PRINTSPR003671.1E-11137148IPR001471AP2/ERF domain
CDDcd000181.68E-28144195No hitNo description
PRINTSPR003671.1E-11159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MCNIVHYKVA NSNDNRSSRQ DDEGINVFNT MFQGNINREE EMSVMVSALT RVVVGNHPSE  60
NIENHHQNNT LISRGVGEKR GRDEVLLHGT NSSHMILSSG GEGSSIRTTR EATFIYTNST  120
NNSIIDESVN NQVRRRYRGV RQRPWGKWAA EIRDPYKAAR VWLGTFDTAE GAARAYDEAA  180
LTFRGSKAKL NFPENVTLLV PSSIQQPIYS SPDPAISPYR SNFIIGHTST EVEPILHTNP  240
SNFIEPIAHT SSLYRSNFIE RNHHMVQQEP YFQAGSTSGG SDFHQTTNSS NSSIYDHPSS  300
SSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-24135196163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.102900.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g051360.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9904890.0S.lycopersicum DNA sequence from clone LE_HBa-20F17 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237483.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLA0A3Q7GWK40.0A0A3Q7GWK4_SOLLC; Uncharacterized protein
STRINGSolyc04g051360.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.13e-21ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]