PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g050080.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 82aa    MW: 9791.36 Da    PI: 10.3723
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g050080.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.5e-15853147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        + rW + Ed+ll ++v+++G ++W++I + +  gR+ k+c+ rw + 
  Solyc04g050080.1.1  8 KRRWNPKEDDLLQKLVEEHGEKNWSLIVQLIL-GRSKKSCRFRWCNQ 53
                        579****************************9.***********985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-19257IPR009057Homeodomain-like
PROSITE profilePS5129421.372358IPR017930Myb domain
SuperFamilySSF466892.76E-20580IPR009057Homeodomain-like
SMARTSM007173.7E-13756IPR001005SANT/Myb domain
CDDcd001673.51E-111052No hitNo description
PfamPF139211.5E-161168No hitNo description
Gene3DG3DSA:1.10.10.604.0E-65880IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MKKKSMIKRR WNPKEDDLLQ KLVEEHGEKN WSLIVQLILG RSKKSCRFRW CNQLNPQVDR  60
RPFTLDEDDI IIKDHAKFGN Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-16681277MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-16681277C-Myb DNA-Binding Domain
1msf_C3e-16681277C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g050080.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027772392.12e-46transcription factor MYB77-like
SwissprotO231601e-29MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A3Q7GVU82e-52A0A3Q7GVU8_SOLLC; Uncharacterized protein
STRINGSolyc04g050080.1.14e-53(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1853624
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.16e-32myb domain protein 73
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]