PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g045430.2.1
Common NameLOC101267598
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 314aa    MW: 35218.3 Da    PI: 6.7329
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g045430.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.53.8e-2832126186
            trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                         rWt+qe+l+Li++++ +e+r+rrg+         + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++e+ s +++ 
  Solyc04g045430.2.1  32 RWTRQEILVLIQGKKVTENRIRRGRtgvvelgspQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIKEETDSFWVMR 122
                         8**********************97777888888**********************************************99999999999 PP

            trihelix  83 dqle 86 
                         ++l+
  Solyc04g045430.2.1 123 NDLR 126
                         9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.4463298IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-53297IPR009057Homeodomain-like
PfamPF138373.9E-1232121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MKLERLTLIP STDSDGRLNG ADDSNKVPRL PRWTRQEILV LIQGKKVTEN RIRRGRTGVV  60
ELGSPQVEPK WASVSSYCKR HGVNRGPVQC RKRWSNLAGD FKKIKEWESQ IKEETDSFWV  120
MRNDLRRDKK LPGFFDREVY DILDRGSGDA DAHEEGGLVL ALGSQVLFDS GKSAASGDDA  180
LFSDFEPDET PHKPINDPPI PTPVSEQQHQ PLSQVSPTQG TSQPTTREPD IGSGHEGRKR  240
KKSESDADDE EARSVQHHLV RALERNGKLV SSQLEAQNMQ FEQDREQRKD HVDNLVAVLT  300
KLADALGRIA DKF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237241RKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.56060.0callus| fruit| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0142410.0Lycopersicon esculentum clone 133441F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010319882.10.0PREDICTED: uncharacterized protein LOC101267598 isoform X2
SwissprotQ8VZ201e-104ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLK4BRH40.0K4BRH4_SOLLC; Uncharacterized protein
STRINGSolyc04g045430.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-105Trihelix family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]