PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g011670.2.1
Common NameLOC101255681
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 375aa    MW: 42395.2 Da    PI: 6.5152
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g011670.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.4e-1188123540
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                         k+ rr+++NReAAr+sR+RKka++++Le+   +L +
  Solyc04g011670.2.1  88 KVLRRLAQNREAARKSRLRKKAYVQQLENSKLKLIQ 123
                         788*************************86555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.9E-584144IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.69186128IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.85E-688123No hitNo description
PfamPF001709.7E-888118IPR004827Basic-leucine zipper domain
PROSITE patternPS00036091106IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.3E-791116No hitNo description
PfamPF141441.5E-30175250IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNSSTYTQFV ASRRMGICEP IHQIGMWDDF NASCPSTSTT MILEVEKCLE DQIPMMDKRL  60
DIETEDTSHG TVGTSNRYEA ETSKPIEKVL RRLAQNREAA RKSRLRKKAY VQQLENSKLK  120
LIQLEQELDR ARKQGLYVGA GLDASQLSYS GTASSGTAVF DTEYGQWVEE QNRQTNDLRN  180
ALHHSQISEA ELRIIVDGCL NHYYELFRVK ATAAKADVLY IMSGMWKTSA ERFFMWIGGF  240
RPSELLKVLT PHLELLTEQQ LREVCNLRQS CQQAEDALSQ GMVKLHQILA EAVAAGQLGE  300
GNYSLPQMGP AIEKLEALVR FVNQADHLRQ ETLQQMSRIL NTLQAAQGLL ALGEYFERLR  360
VLSSHWATRL HEPA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.129200.0cell culture| fruit| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00642SELEXTransfer from LOC107771743Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g011670.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236730.10.0TGACG-sequence-specific DNA-binding protein TGA-1A isoform X1
SwissprotP142320.0TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBLA0A3Q7FZL20.0A0A3Q7FZL2_SOLLC; Uncharacterized protein
STRINGSolyc04g011670.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Representative plantOGRP26791132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-159bZIP family protein
Publications ? help Back to Top
  1. Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J
    A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems.
    Plant Mol. Biol., 2000. 42(5): p. 679-88
    [PMID:10809441]
  2. Johnson C,Boden E,Desai M,Pascuzzi P,Arias J
    In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor.
    Plant J., 2001. 28(2): p. 237-43
    [PMID:11722767]
  3. Katagiri F,Seipel K,Chua NH
    Identification of a novel dimer stabilization region in a plant bZIP transcription activator.
    Mol. Cell. Biol., 1992. 12(11): p. 4809-16
    [PMID:1406663]
  4. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  5. Miao ZH,Lam E
    Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants.
    Plant J., 1995. 7(6): p. 887-96
    [PMID:7599649]
  6. Pascuzzi P,Hamilton D,Bodily K,Arias J
    Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor.
    J. Biol. Chem., 1998. 273(41): p. 26631-7
    [PMID:9756903]