PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g007430.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 185aa    MW: 20674 Da    PI: 9.7113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g007430.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.8e-124187455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        +h+++ErrRR +i +++  L +l+P++      K + a++L +A+++I+ Lq
  Solyc04g007430.1.1 41 MHKMNERRRRYKIAKKMKVLETLIPNC-----NKSDRASVLDQAIQHIQALQ 87
                        7*************************8.....699****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.08E-113591No hitNo description
SuperFamilySSF474591.57E-153699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.4493786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-154197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-94187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-114392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MLARFGVCYV AEIETNNGSG ITSRRNEDGL YQYPKASCVE MHKMNERRRR YKIAKKMKVL  60
ETLIPNCNKS DRASVLDQAI QHIQALQHQI QVMSMDRIRG STLVAAGRNQ IMQSTLHFNP  120
YIGAIGYFFN FSNILCSNFS PMLSTGSEFP FLPLAVACNL LHPGPIMEVF TRGSASVAPL  180
EKRV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14550ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170292.11e-112PREDICTED: transcription factor PIF5-like isoform X4
TrEMBLK4BNQ01e-137K4BNQ0_SOLLC; Uncharacterized protein
STRINGSolyc04g007430.1.11e-137(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
AsteridsOGEA1524888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-12phytochrome interacting factor 3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]