PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g007180.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 336aa    MW: 37490.7 Da    PI: 4.5293
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g007180.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1891141155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+ykGVr++k +g+W+AeIrd +     + +r++lg++ ta eA +a++  r+++e 
  Solyc04g007180.1.1  91 SKYKGVRQRK-WGKWAAEIRDpF-----KgRRVWLGTYNTAVEASRAYELKRLEFET 141
                         89*******9.**********55.....45***********************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.95E-1791140IPR016177DNA-binding domain
PfamPF008472.7E-1291141IPR001471AP2/ERF domain
CDDcd000184.40E-2491149No hitNo description
Gene3DG3DSA:3.30.730.101.6E-2192141IPR001471AP2/ERF domain
PROSITE profilePS5103220.17892151IPR001471AP2/ERF domain
SMARTSM003804.6E-1992154IPR001471AP2/ERF domain
PRINTSPR003674.6E-993104IPR001471AP2/ERF domain
PRINTSPR003674.6E-9115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MKKKVDTNRL VRKIRIVCND PDATDDSSDD DSRCKRFVRE IKLQIGNSFN LRKASEIECS  60
FQDSNNGEKK TKKEGLVKPL IQPRPAGGLL SKYKGVRQRK WGKWAAEIRD PFKGRRVWLG  120
TYNTAVEASR AYELKRLEFE TRAKISRTNV SKQSSGSMVS EYQNQSQNVA SGVSDDYAES  180
SVSRTSHSLS SSSVLELDTL TSVSASAPIL RLNGPNDNEK VSNVAPLEAN VVEQEVPELA  240
MMEETLPLSQ IGESMDLDLE LESFLIGADD FNQHLDEFVV NDFEDPPVYL IEGDEQLPTG  300
LPDFDDFNFD GYNESFSWMD DAPRTNGTPL NIACP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1284145668Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.174150.0flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g007180.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236998.10.0ethylene-responsive transcription factor ERF119
TrEMBLA0A3Q7FYU30.0A0A3Q7FYU3_SOLLC; Uncharacterized protein
STRINGSolyc04g007180.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29572351
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.21e-23ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]