PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g006980.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 376aa    MW: 42768 Da    PI: 8.7075
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g006980.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1523.8e-471052452133
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....sec...eaesssssasns 85 
                         +gkkdrhski+T++g RdRRvRls+++a++fFdLqd+LGfdk+sktieWL+ +++ aik+l +++ +++    ++    +++sss +++++
  Solyc04g006980.1.1 105 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDMLGFDKASKTIEWLFSKSNNAIKDLSENTPQKEysdgNKIvinSNNSSSYEGKSD 195
                         79**************************************************************333333333233455555555555555 PP

                 TCP  86 ssgkaaksaa.kskksqksaasalnlak.esrakarararertrekmrik 133
                         s  ++++++  ++  ++k++  ++n++k esr+karararert+ekm+ik
  Solyc04g006980.1.1 196 SFMSECEENSiNELGKDKEKIMQNNPHKrESREKARARARERTKEKMMIK 245
                         55588888876666666666666788889******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-44105243IPR005333Transcription factor, TCP
PROSITE profilePS5136935.882107165IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.105224241IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MFPSSNNHDT FSYTSKTYLE RSFTYDHQNP SSSSRQEDNP FFLNFPSPFL DHNESPLSQI  60
LPQDHHVKEG NLTHLSSETS KEEMSIEAKP SSKKRSLSTT PRKRTGKKDR HSKICTAQGV  120
RDRRVRLSLH IARKFFDLQD MLGFDKASKT IEWLFSKSNN AIKDLSENTP QKEYSDGNKI  180
VINSNNSSSY EGKSDSFMSE CEENSINELG KDKEKIMQNN PHKRESREKA RARARERTKE  240
KMMIKGLEKG NPSNMFDQLG SSRSNSGFLD QDSNNNSYNT SVNQEKGSPH EANSQSLEHH  300
FPIQNYLGGA SNSSTIDVGN CFMSFHGNWE INYAPMKSTN YSTTFAGNPS SIYLAQQYQT  360
LDQEKNLSSK HHRLE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g006980.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM9210660.0Solanum lycopersicum BRANCHED2a gene, partial sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234598.10.0TCP transcription factor 22
TrEMBLA0A3Q7GNB60.0A0A3Q7GNB6_SOLLC; Uncharacterized protein
STRINGSolyc04g006980.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.18e-31TCP domain protein 12
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]