PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g005170.1.1
Common NameLOC101255785
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 192aa    MW: 22298.6 Da    PI: 6.363
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g005170.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.14.5e-1481140564
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                         +++rr+++NRe+ArrsR RK+  ++eL   v  L +eN  L+++l++ ++  +k+ +e++
  Solyc04g005170.1.1  81 RKQRRMISNRESARRSRMRKQRHLDELWSQVVRLRTENNNLINKLNQVSESHEKVVQENM 140
                         79**************************************************99999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.6E-1677141IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.26679142IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.45E-1281131No hitNo description
PfamPF001707.3E-1281140IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.4E-1181134No hitNo description
CDDcd147027.36E-1982132No hitNo description
PROSITE patternPS0003608499IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MISSEAATIH YLAQENPSSL PIDYTFTHKN FQFNNTFLTN NYQSFTFPIQ DLISTQPASC  60
ISSNSTSDES EEQQHRIIDE RKQRRMISNR ESARRSRMRK QRHLDELWSQ VVRLRTENNN  120
LINKLNQVSE SHEKVVQENM QLKDEAYDLR RLLVDIQVAT PFNGFSNIDD NVPSSLKTES  180
SNQSTTERKL E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193100RRSRMRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.231330.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g005170.1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237067.11e-139basic leucine zipper 43
TrEMBLA0A3Q7FUZ01e-137A0A3Q7FUZ0_SOLLC; Uncharacterized protein
STRINGSolyc04g005170.1.11e-138(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9472492
Representative plantOGRP31041129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-47basic leucine-zipper 42
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]