PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g123430.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 514aa    MW: 56903.8 Da    PI: 5.2424
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g123430.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.85.5e-13240296155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++t+e+Aa+a++ a++k++g
  Solyc03g123430.2.1 240 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDTEEKAARAYDLAALKYWG 296
                         78*******************333.44555535555.77******************98 PP

2AP233.51.1e-10307350955
                 AP2   9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Solyc03g123430.2.1 307 HHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 350
                         7789******988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-13240302IPR016177DNA-binding domain
PfamPF008473.2E-10240296IPR001471AP2/ERF domain
CDDcd000187.11E-19240305No hitNo description
SMARTSM003801.7E-15241305IPR001471AP2/ERF domain
PROSITE profilePS5103217.543241358IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-11241305IPR001471AP2/ERF domain
PRINTSPR003671.1E-6242253IPR001471AP2/ERF domain
SMARTSM003801.8E-26306364IPR001471AP2/ERF domain
PfamPF008472.1E-5307350IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-14308360IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-15308358IPR001471AP2/ERF domain
CDDcd000182.16E-21308360No hitNo description
PRINTSPR003671.1E-6340360IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MSNWLGFSLT PDFRIDDDDE EEVKNYERRN EAAENTPVSV MPLSTNRSLC MMDPFPRCEP  60
TEDCWRYENH EMSTANNPEE EEGPKLEDFL GCCYSNSPSN EEQQISEINV NIPPSINQSD  120
HEQHQLEIGA NMKLIQSPQM MIQNSQLQSS HHEFAHSTSS VYHLPFDGAT SVSGFKSWLR  180
QASVAAPLMS SAEEIVNPSN CQALSLAAAP KKRPVAVKNG GGSKESVPRK SIDTFGQRTS  240
QYRGVTRHRW TGRYEAHLWD NSCRKEGQTR KGRQGGYDTE EKAARAYDLA ALKYWGPNTH  300
INSPEKHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG TSAVTNFDIS  360
KYDVKRICSS STLITGDLAK RSPSKDSVVC PSSYEDYSSC TTSPQPILAI TNGEQLQQPI  420
DSFMNMVPLM GAAGSSSRSS SNAPSPKCSG SGEMSCDFGV GLEYPQAYYS PVQVQDHKFE  480
DGSKENDDNS SSSGQIGNMD LVHPVPMFAL WNQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g123430.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2469370.0Solanum lycopersicum chromosome 3 clone HBa0033F13, complete sequence
GenBankAC2470030.0Solanum lycopersicum chromosome 3 clone HBa0033F13, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001353688.10.0AP2 domain transcription factor LIA
SwissprotQ1PFE11e-102AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A3Q7GM430.0A0A3Q7GM43_SOLLC; Uncharacterized protein
STRINGSolyc03g123430.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.19e-97AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]