PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g122030.1.1
Common NameLOC101257846
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 364aa    MW: 40266.9 Da    PI: 9.9011
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g122030.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix513.7e-1665152186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W+++ + +Liea  e+  +l+rg+lk+++W++v++ + +++ ++++pk   qCk++++ ++k+yk +k     +  +  s++p+fd+l+
  Solyc03g122030.1.1  65 CWSEEATAVLIEAWGERYMELSRGNLKQKHWKDVADIVsSREDYRKTPKtdiQCKNRIDTVKKKYKLEKSKIAAG--QGPSKWPFFDKLD 152
                         7*************************************856666666644449*****************99997..56668******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.5E-2663153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0048831Biological Processregulation of shoot system development
GO:0005730Cellular Componentnucleolus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MENDEETQSG GSGSPESPRS NGRITVTVAS APPQNTLTLA LPIQQSRPAG ASGGGGGSGG  60
GREDCWSEEA TAVLIEAWGE RYMELSRGNL KQKHWKDVAD IVSSREDYRK TPKTDIQCKN  120
RIDTVKKKYK LEKSKIAAGQ GPSKWPFFDK LDMLIGPTAK INPTVAAGPS NLYSGNQHVP  180
MGIPMGVRSL PQLRQHQQLQ KQKQPSRKRP HMDSDTSESE SEPDLSPAST DSFPPGTFQK  240
KRPRFQKEML NSSALRQGGI GEASGNKNWG NSVRELTQAI LKFGEAYEQT ETAKLHQMVE  300
MEKQRMKFAK DMELQRMQFF MNTQLEIAQL KHRRSENSNH HSNNHAAAAS NHNNNNNNSD  360
NSI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.150450.0callus| cell culture
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1247400.0Solanum lycopersicum chromosome 3 clone C03HBa0295I12, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235567.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG81e-104ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLK4BN010.0K4BN01_SOLLC; Uncharacterized protein
STRINGSolyc03g122030.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
AsteridsOGEA103321823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-66sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]