PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g121990.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 603aa    MW: 66974.3 Da    PI: 6.3946
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g121990.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12.1e-08485533348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT  E  +lv++v+++G g W+ I r        Rt  ++k++w+++l
  Solyc03g121990.2.1 485 PWTINEVVKLVEGVARYGAGKWSEIKRLAFsacPYRTSVDLKDKWRNLL 533
                         8****************************99**9*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.068478537IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-14479536IPR009057Homeodomain-like
SuperFamilySSF466892.62E-16480538IPR009057Homeodomain-like
SMARTSM007171.6E-6482535IPR001005SANT/Myb domain
CDDcd116602.32E-18484534No hitNo description
PfamPF002495.8E-6485533IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0031627Biological Processtelomeric loop formation
GO:0046686Biological Processresponse to cadmium ion
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MEASEPKFED SAVPVTSTIR ALEKEIAHPI VYQLVRSRLV PATQDEIMVV EDLLEDDKCE  60
SKLVPDTRQI SESCVTEGYP LERNSFQVTE EKSNVLVDSV PDLGKIDAPN KVAVHGLAPL  120
SELSNVDHSV RNDVCSHSQD APNEDTPSTS AAGSSWKPDF SKLEGKICLD DLPVKELQET  180
FKATFGRETS VKDKQWLKRR ITMGLTNSCD FSCTTFIIRD NVVVKKGEEQ ICHREKSRIS  240
ADSEDGVANL NSRGSFSDHD NKINDAADLS GADVSSSALE SCNVTKDLNA EQITAKRARK  300
PTKRYIEELS EIESRETSEK LASPEKIPRY QFACPETHIR PTKNVRSYAR PLVTRQDSLG  360
GSGVQIPFVS RIRRSRPREN FMPLLKLQPS GMDMATRQVR SAFDISGPQE DDKRNNDLIK  420
TSSSTGWTEQ PRIAACEKDE HSSGMKIVEL ENDVEVNDCS EDNSDDNVVT VPTQKGGMRR  480
KHHRPWTINE VVKLVEGVAR YGAGKWSEIK RLAFSACPYR TSVDLKDKWR NLLKASFVQL  540
PAEKGILNSR KQASVPIPAP ILSRVRELAD MQGQIPPVLS VCKSSGHSSS DRSVHEARSG  600
FL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.22850.0flower| fruit| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g121990.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1247400.0Solanum lycopersicum chromosome 3 clone C03HBa0295I12, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069816.10.0uncharacterized protein LOC107014425 isoform X2
TrEMBLA0A3Q7FXK70.0A0A3Q7FXK7_SOLLC; Uncharacterized protein
STRINGSolyc03g121990.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118812023
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-103TRF-like 6
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]