PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g121660.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 543aa    MW: 59235.1 Da    PI: 8.8675
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g121660.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-0599121123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Solyc03g121660.2.1  99 FVCEICNKGFQRDQNLQLHRRGH 121
                         89*******************88 PP

2zf-C2H213.30.00026175197123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H +t+
  Solyc03g121660.2.1 175 WKCEKCSKRYAVQSDWKAHSKTC 197
                         58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-698121No hitNo description
Gene3DG3DSA:3.30.160.601.8E-598121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01799121IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94999121IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
SMARTSM00355250140170IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4163196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.16E-6170195No hitNo description
SMARTSM00355130175195IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MKDLMNQQAQ VPGVVMEENM SNLTSASGEA SVSSSNRNDN NNNNNNNIYP HHQYNFAPPN  60
QQTQPAQQIK KKRNQPGNPD PEAEVIALSP KTLMATNRFV CEICNKGFQR DQNLQLHRRG  120
HNLPWKLKQR TSKEIRKKVY VCPETSCVHH DPARALGDLT GIKKHFCRKH GEKKWKCEKC  180
SKRYAVQSDW KAHSKTCGTK EYRCDCGTLF SRRDSFITHR AFCDALAEES ARAITANPIL  240
PSQAGSSTSQ MNFQFQPFNH EIPVTFSLKK EQQTGFNLRP EIPPWLLVGG GGGPGPGPGP  300
PQPQPIDLSS SIFQSSRFSD QDYTQSHQHH QQGFMNPNPS LSGPTSGAMA SPHISATALL  360
QKAAQMGATM SNKASTVSAV SSGPGPAMLM RPHQIHVSAT ATAAESVSNA TDFGLNLSSR  420
EDLPTGFFNS LASYGNKAAN PSAVITPVTI PLSTAPHPTP STLQDMMNSF SSVNPTGFEG  480
SNFEDPFSIL NPKNNNGSGN DDMTKDFLGL RPLSHSDIFN IAGLVNSTPN ETQSQNHKTW  540
QS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35171232364Zinc finger protein JACKDAW
5b3h_F3e-35171232364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125137KLKQRTSKEIRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.46970.0callus| floral bud| flower| fruit| leaf| root| seed
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g121660.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136590.0Lycopersicon esculentum clone 132478R, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235590.10.0protein indeterminate-domain 7 isoform X1
RefseqXP_004235591.10.0protein indeterminate-domain 7 isoform X1
RefseqXP_010318499.10.0protein indeterminate-domain 7 isoform X1
RefseqXP_025886008.10.0protein indeterminate-domain 7 isoform X1
SwissprotQ8H1F51e-126IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A3Q7FXF10.0A0A3Q7FXF1_SOLLC; Uncharacterized protein
STRINGSolyc03g121660.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]