PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g119770.2.1
Common NameBRC1A, SLBRC1A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 347aa    MW: 39325.3 Da    PI: 8.9961
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g119770.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.81.1e-391112593137
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceae 76 
                          kkdrhski T+ g+RdRR+Rls+e+a++fF Lqd LGfdk+skt+eWLl+++k a+ +l++                  ss+sa++ce  
  Solyc03g119770.2.1 111 SKKDRHSKINTAHGPRDRRMRLSLEIARKFFNLQDLLGFDKASKTVEWLLTKSKSAVNDLVQKinkdkcsgsenpniatvSSPSAESCEVI 201
                         79*************************************************************9999988888887777777777777333 PP

                 TCP  77 sssssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmriknkln 137
                         ++s +++    ++ +k+++k+ ks ++a  +  +akesr++arararert  k+++++++n
  Solyc03g119770.2.1 202 DESAATN---TAETQKQQKKKVKSIRRAIIHPVVAKESRKEARARARERTIIKKSLNDNTN 259
                         3333333...33555555566677777777899999*************988888776655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.4E-43111252IPR005333Transcription factor, TCP
PROSITE profilePS5136934.256112170IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.321234251IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MYPSSNYSPN ISSSSSFFHI NIPSPSMQYE PEFIQYFHDF QFIQPSYDQN TNIPAEEAAD  60
SDKLDKIEED QSIIKSCNNN KKDEKSSSST STIRRKNNKR TTSGSAGVGP SKKDRHSKIN  120
TAHGPRDRRM RLSLEIARKF FNLQDLLGFD KASKTVEWLL TKSKSAVNDL VQKINKDKCS  180
GSENPNIATV SSPSAESCEV IDESAATNTA ETQKQQKKKV KSIRRAIIHP VVAKESRKEA  240
RARARERTII KKSLNDNTNN NNNGDQSMAD EDLTRSLRSW NTTFEDHQSG IQGYNNNNNM  300
NVVDNFNLVD TSNWSPFMFN YHQINTEISQ EHQFANFQYS GKLWEA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.259030.0cell culture
Function -- GeneRIF ? help Back to Top
  1. SlBRC1a and SlBRC1b are expressed in dormant vegetative axillary buds. SlBRC1b loss-of-function leads to increased branch outgrowth in tomato. [SlBRC1a]
    [PMID: 21554455]
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g119770.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4963270.0Solanum lycopersicum TCP transcription factor 9 (TCP9) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233802.20.0TCP transcription factor BRC1a
TrEMBLF6KB980.0F6KB98_SOLLC; BRANCHED1A isoform 1
STRINGSolyc03g119770.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.17e-27TCP domain protein 12
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Mart
    Role of tomato BRANCHED1-like genes in the control of shoot branching.
    Plant J., 2011. 67(4): p. 701-14
    [PMID:21554455]