PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g118230.1.1
Common NameLOC101247204
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 334aa    MW: 37846.1 Da    PI: 5.3856
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g118230.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.67.1e-2337128183
            trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                         rWt+qe+l+Li++++  eer  rg+         + +p+W++vs+++r++g  r+p+qC+++w+n+  ++kkik++e +    s+s +   
  Solyc03g118230.1.1  37 RWTRQETLVLIQGKKIAEERAHRGRkstsvfgsdKPEPKWDSVSSYCRQHGADRGPVQCRKRWSNMISDFKKIKTWETQAYGSSESYWIIS 127
                         8**************999999987556677777699******************************************9876666677655 PP

            trihelix  83 d 83 
                         +
  Solyc03g118230.1.1 128 N 128
                         5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.14330103IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-536104IPR009057Homeodomain-like
PfamPF138376.1E-1236117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MSTLGSTEMN ENAATLADGQ QQKMTEEGKS KTPRHSRWTR QETLVLIQGK KIAEERAHRG  60
RKSTSVFGSD KPEPKWDSVS SYCRQHGADR GPVQCRKRWS NMISDFKKIK TWETQAYGSS  120
ESYWIISNDL RREKRLPGSF DREVYNVLDG KEFTAEAYQL ALVTITTDEK LDYGVETVEE  180
EEAEEGEEEN DNVSHTGEYT MEDDVMHPAA EEVGSSPLKE HIVIDKKAKS IPSPVPRSGT  240
AEGEQPGPDF WNSPMYKDRL KKRRLSPDGC IDSNLGYKLL KTLERNTNIL HSQLDAQMEN  300
RQREMEQQKE QTNSLIAVLN KVADAVARVA DKM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257263DRLKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236436.20.0PREDICTED: uncharacterized protein LOC101247204
TrEMBLK4BLX40.0K4BLX4_SOLLC; Uncharacterized protein
STRINGSolyc03g118230.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP17471336
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.17e-58Trihelix family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]