PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g117130.2.1
Common NameSlERF52
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 163aa    MW: 18646.8 Da    PI: 6.7829
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g117130.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18754253
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                        +y+GVr+++ +g+Wv+eIr+ps    ++r++lg++ t e+Aa+a+++a++ +
  Solyc03g117130.2.1  7 KYRGVRQRH-WGSWVSEIRHPSL---KTRIWLGTYETSEDAARAYDEAARLM 54
                        8*******9.**********944...5*********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.05E-33666No hitNo description
SMARTSM003802.8E-40770IPR001471AP2/ERF domain
PfamPF008471.5E-12756IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-21766IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-33765IPR001471AP2/ERF domain
PROSITE profilePS5103220.85764IPR001471AP2/ERF domain
PRINTSPR003671.3E-10819IPR001471AP2/ERF domain
PRINTSPR003671.3E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSRPQQKYRG VRQRHWGSWV SEIRHPSLKT RIWLGTYETS EDAARAYDEA ARLMCGSTAR  60
TNFPYNATES SRFLSSALIA KLQRCNMSSL TATSRRPGKT RLEDKKENEI STLVRDTGDG  120
EERQSESASQ QYMKALEDEH IEQMIEELLD YGSIEMCSVR NE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-17664463ATERF1
3gcc_A3e-17664463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.242920.0fruit
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. ETHYLENE-RESPONSIVE FACTOR 52 is specifically expressed in pedicel abscission zones (AZs) and its expression is suppressed in plants with impaired function of MACROCALYX and JOINTLESS, which regulate pedicel AZ development.[ERF52]
    [PMID: 24744429]
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g117130.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307057.11e-118ethylene-responsive transcription factor 52
SwissprotQ94AW51e-60ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A3Q7GHX31e-117A0A3Q7GHX3_SOLLC; Uncharacterized protein
STRINGSolyc03g117130.2.11e-118(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.14e-52ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano T,Fujisawa M,Shima Y,Ito Y
    The AP2/ERF transcription factor SlERF52 functions in flower pedicel abscission in tomato.
    J. Exp. Bot., 2014. 65(12): p. 3111-9
    [PMID:24744429]