PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g117070.1.1
Common NameLOC101268559
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 230aa    MW: 25217.7 Da    PI: 9.9223
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g117070.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000176082123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C + F ++  L  H++ H
  Solyc03g117070.1.1 60 FSCNYCQRKFYSSQALGGHQNAH 82
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.4E-65787No hitNo description
PROSITE profilePS5015711.4276087IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MQVQSSNSNQ ISNDEHENND LILDLRLDHG VKSNIQTSSS DASRSAGNNN NNTESEPRVF  60
SCNYCQRKFY SSQALGGHQN AHKRERTIAK RSQKISAAAF GYDNKYSSMA SLPLHGSFNR  120
SLGIQVHSMI HKPATSTAFG APALYGHPGW SIRRPIEQQP AIGRLGTESN FTNNYQTAAT  180
SSGAAAARFD NIIQKFPQID GISQYRWDSG GGRTNKPDET KKLDLSLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g117070.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235930.11e-171zinc finger protein 3
TrEMBLA0A3Q7FT101e-170A0A3Q7FT10_SOLLC; Uncharacterized protein
STRINGSolyc03g117070.1.11e-171(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58272233
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.15e-43C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]