PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g115540.1.1
Common NameLOC101263505
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 440aa    MW: 48315 Da    PI: 7.102
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g115540.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.5e-16237283455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+Lq
  Solyc03g115540.1.1 237 VHNQSERRRRDRINQRMKALQRLVPNA-----SKTDKASMLDEVIDYLKQLQ 283
                         6*************************9.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.6E-19231302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.057233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-19236310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-14237283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.16E-10238287No hitNo description
SMARTSM003533.4E-17239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MSHCTVPTWN PSYQRQEHVV EAEEANKYPH LHNQQIQINH LLPMSSKCEE VAELTWEKGQ  60
LGMHGLGGIL SISQAKQTLG RTGDTLESIV HQATYHAKNQ TSIHQNYAQN EDQDLKTGVL  120
YSGGKWGESS QQMAPPRATV LAKKRMRPSE SDPQYGGAED HEYAEGSACA SASATFYREN  180
DTTMVTWPSF DESSRSIKSK TACDEDSACH GGGSENKEEE HETKRSNSSR RSRAAAVHNQ  240
SERRRRDRIN QRMKALQRLV PNASKTDKAS MLDEVIDYLK QLQAQVQLMS STPRNMAPQM  300
MMPLGMHQHI QMSLLARMGV GVGLGMGMGM FDMTALARAA AASATTHPNQ MTTAPINIPF  360
TPSGAFALPA APANSVSPAS ATTSTTTNSI PFTNPYSAFL PQSMDMEFFN NMAALYRQQL  420
ANQSTQITGS KLNQENQTE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241246ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2385680.0Solanum lycopersicum chromosome 3 clone C03HBa0071P11, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236485.10.0PREDICTED: transcription factor UNE10
TrEMBLK4BL560.0K4BL56_SOLLC; Uncharacterized protein
STRINGSolyc03g115540.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54371732
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-35bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]