PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g115440.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 441aa    MW: 49606.4 Da    PI: 4.3641
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g115440.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33.1e-07180227347
                         SS-HHHHHHHHHHH....HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdav....kqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +W++eE+el+ ++v    + lG++ W+  a +++  R +++++s+++++
  Solyc03g115440.1.1 180 KWSEEEEELFHEVVlsnpASLGNNFWNHLAVEFP-SRRREELVSYYFNV 227
                         8*************4444456777**********.***********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0021177230IPR001005SANT/Myb domain
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MGTHGSASNS SWPTSSTSEE DNRPEAPFHR LTSPEYYYFD HLFRAAAHHR EIYSSLSSNP  60
QKMVPIGPDF QAELPEWTPY SNKDKPCIEG IHETVSSPSQ ANENKLAGRT IIPMPKMELL  120
ADQVENIGER RVECSCEDKD SIRCVQLDVI EAREKLKLAL GEETFVRLGF CDMGEVVAEK  180
WSEEEEELFH EVVLSNPASL GNNFWNHLAV EFPSRRREEL VSYYFNVFIL RKRAEQNRFD  240
PLNIDSDNDE WHDAVDDADE AAKMTDEDED SVVESPAHHN GLSYNMIHEE RDRRTYDEDA  300
HEAICEDYKP VNFGSRKVFT DVQESCPSKF FDSNNSFKVG MQPQDQGLSS KVVESCTTDA  360
AGVTSESSLG KTNNDNHWAS DIAGMGSGTK HDSLLESCNG KEWDGGYLNC ARNEVGLVPT  420
PTMIEEVFGD GAWIYKSRDG *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.87460.0callus| cell culture| flower| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g115440.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2385680.0Solanum lycopersicum chromosome 3 clone C03HBa0071P11, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010318838.10.0uncharacterized protein LOC101262606
RefseqXP_025885898.10.0uncharacterized protein LOC101262606
TrEMBLA0A0V0ILJ40.0A0A0V0ILJ4_SOLCH; Putative ovule protein
STRINGSolyc03g115440.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15141625
Representative plantOGRP294745
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]