PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g115120.1.1
Common NameLOC101268858
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 373aa    MW: 43463.8 Da    PI: 6.2236
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g115120.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00077339359222
                         EETTTTEEESSHHHHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                          C  Cgk F++  + ++H ++
  Solyc03g115120.1.1 339 YCVVCGKKFKSEKQWRNHEQS 359
                         5*****************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.1E-2042120IPR001623DnaJ domain
SuperFamilySSF465651.31E-2143132IPR001623DnaJ domain
SMARTSM002711.0E-1546108IPR001623DnaJ domain
CDDcd062571.42E-1547105IPR001623DnaJ domain
PROSITE profilePS5007617.39147116IPR001623DnaJ domain
PfamPF002265.1E-1848113IPR001623DnaJ domain
PRINTSPR006256.6E-124967IPR001623DnaJ domain
PRINTSPR006256.6E-126782IPR001623DnaJ domain
PRINTSPR006256.6E-1288108IPR001623DnaJ domain
PROSITE patternPS00636093112IPR018253DnaJ domain, conserved site
SuperFamilySSF576676.35E-13325368No hitNo description
SMARTSM004511.6E-5335369IPR003604Zinc finger, U1-type
PROSITE profilePS501578.767338367IPR007087Zinc finger, C2H2
PfamPF121711.2E-10338363IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280340362IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MFWSWLLESV LKKVPLPFAA KQPLTDQPKP TSLSFPGITA LSSEKRCFYE VLGVNCDCTP  60
NEIRSAFRKL ALQRHPDKLV RSGVPEFEAT AIFQELVNAY DVLSDAQERA SYDSQRSAYQ  120
ILFSNSDPKN SSNYSGSVPD LSSFFSNSVY SGYSDERKGF YKVYGDLFEK IYHRELNLAR  180
KLGTNLPEEA PIMGNMQSPY AQVTAFYNYW LGFATVNDFC QSDVYKSTLA SDRNSRRMME  240
DINKKLRKKA KRDYNVTVRG LAEFVRRRDR RVIEMQMKRN EELEKKNEEG RKRMEELERE  300
KAERARNYVE PEWTRTEELQ DGGIEEEESE EEDEEEELYC VVCGKKFKSE KQWRNHEQSK  360
KHKENEKMAA LT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243251KKLRKKAKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g115120.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1247390.0Solanum lycopersicum chromosome 3 clone C03HBa0233O20, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236500.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-122JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A3Q7GGK60.0A0A3Q7GGK6_SOLLC; Uncharacterized protein
STRINGSolyc03g115120.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61101516
Representative plantOGRP354177
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-111DNAJ heat shock N-terminal domain-containing protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]