PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g114260.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 266aa    MW: 31137.2 Da    PI: 5.2873
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g114260.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.12e-2011263128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         +G+rFhPtd el+ +yLk+  +g+    +++ i+ +diy    Pw++   ++ eek  yf ++ +k+  ++ r +r+ ++g+Wk +  ++ 
  Solyc03g114260.1.1   1 MGIRFHPTDTELI-NYLKRFFKGELSLNQQCpIQFADIYGDqPPWEIF-GANFEEKFRYFITPLKKRRIKDARFSRTCAKGTWKGQTGEEL 89 
                         59***********.9*******9985444556*******87368***6.556677888**************************7777777 PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + ++  g +vg k+ + f   +++ g++ +W+m ey++
  Solyc03g114260.1.1  90 IRRNgMGPVVGFKRKFRFE-TSDQCGHNKTWLMIEYQV 126
                         877656778*********7.7889999*********86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.321150IPR003441NAC domain
PfamPF023651.0E-142126IPR003441NAC domain
SuperFamilySSF1019412.22E-232150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGIRFHPTDT ELINYLKRFF KGELSLNQQC PIQFADIYGD QPPWEIFGAN FEEKFRYFIT  60
PLKKRRIKDA RFSRTCAKGT WKGQTGEELI RRNGMGPVVG FKRKFRFETS DQCGHNKTWL  120
MIEYQVADSF FKENNHILKE DFVVCRIKKK KIMDKEKNVD HVIEAQDGDV AGIIDPMLLD  180
PNHNNVYSTR EDQVRVCDEV EATTTEFDVR NTMEKRETAL EVQEGNGVDD IRSNEFQEGM  240
YKVLQDFSFD IPDEWLQNSH ILQDI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16267KKRRIK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g114260.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2469311e-177Solanum lycopersicum chromosome 3 clone EcoRI0087D24, complete sequence
GenBankAC2469971e-177Solanum lycopersicum chromosome 3 clone EcoRI0087D24, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236507.20.0NAC domain-containing protein 2-like
TrEMBLA0A3Q7GFY90.0A0A3Q7GFY9_SOLLC; Uncharacterized protein
STRINGSolyc03g114260.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.15e-15NAC domain containing protein 50
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]