PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g111470.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YC
Protein Properties Length: 274aa    MW: 29746.3 Da    PI: 8.0809
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g111470.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC108.93e-3453139184
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 
                         ql+ fw++q   i +  df+ h+lP+ rikki+k+d++v+misae+P+ll kacelfi elt rswl+a+e++rrtlkk d +++ +
  Solyc03g111470.1.1  53 QLQLFWAAQlqeIMQIGDFEGHSLPIFRIKKIMKSDKEVRMISAESPILLDKACELFIQELTHRSWLKAQECQRRTLKKIDFFTTEE 139
                         89*****9976777899***************************************************************9887655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.92E-1861134IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.0E-2470133IPR009072Histone-fold
PfamPF008083.5E-1675133IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MASHSDPMAA NVEVATSVNA EAAAAAVNVK AVAVAEATAQ PVVNANNYLL QQQLQLFWAA  60
QLQEIMQIGD FEGHSLPIFR IKKIMKSDKE VRMISAESPI LLDKACELFI QELTHRSWLK  120
AQECQRRTLK KIDFFTTEEE APTYVPGMLG NIPNHIPYCY SPMGPPAPPM APLAPSMGPP  180
APSMEPPAPS MPAPPRGIMG RRAMPWVTTS MHVPPPLYPR QFGWYAAGDN PYATRGSSGQ  240
GSGDPQSGMM EPPRLIGYRM ISKPSGAIWR SGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B6e-2460133275NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g111470.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027771200.11e-133nuclear transcription factor Y subunit C-1-like
TrEMBLA0A3Q7FNU81e-105A0A3Q7FNU8_SOLLC; Uncharacterized protein
STRINGSolyc03g111470.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2733622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.24e-27nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]