PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g111460.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YC
Protein Properties Length: 289aa    MW: 31871.2 Da    PI: 8.2021
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g111460.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC134.43.4e-42431451100
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql+ fw++q   i +  df+ h+lP++rikki+k+d++v+misae+P+ll+kacelfi elt rswl+a+e++r+tlkk d+++++++t+ 
  Solyc03g111460.1.1  43 QLRLFWAAQlqeIIQIRDFRGHSLPISRIKKIMKSDKEVRMISAESPILLAKACELFIQELTHRSWLKAQECQRQTLKKIDLFTVLKETEL 133
                         79******966666889************************************************************************** PP

               NF-YC  89 fdflvdivprde 100
                         fdflvd++  de
  Solyc03g111460.1.1 134 FDFLVDVISMDE 145
                         *******99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.04E-2353137IPR009072Histone-fold
PfamPF008081.7E-1765126IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.8E-2866141IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MASHSDPVAA NAEVAAAVNA EEEVAEATAQ PIVNANDYLL QQQLRLFWAA QLQEIIQIRD  60
FRGHSLPISR IKKIMKSDKE VRMISAESPI LLAKACELFI QELTHRSWLK AQECQRQTLK  120
KIDLFTVLKE TELFDFLVDV ISMDEPEEEA PTYVPGMLGN IPNRISYYYS PMGPPAPPMA  180
PLAPSVRPPA PSMGPPAPSM PTSPRGIMGR RAMPWVAPSM HVPPPLYPRK FGWYAAGGNP  240
YLKVMPLLIQ MLSGTGTTEA LSGMMEPPRL IGYRMISKPS GAIWRSGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-3151141393NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g111460.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886122.11e-177nuclear transcription factor Y subunit C-2-like
SwissprotQ9SMP03e-45NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA0A3Q7FNU81e-141A0A3Q7FNU8_SOLLC; Uncharacterized protein
STRINGSolyc03g111460.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1580736
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.17e-42nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2015.
    [PMID:24831307]
  3. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2014. 9(7): p. e29109
    [PMID:25763489]
  4. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]