PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g111450.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YC
Protein Properties Length: 319aa    MW: 35307.2 Da    PI: 4.4384
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g111450.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC135.91.1e-42811841101
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         q++ fw+ q   ie++ dfk+h++P++rik+i+k++++  ++sae+P+l+skacelf+leltlrsw ha++n+r +lkk+d aaa+ rt++
  Solyc03g111450.1.1  81 QMRIFWNCQreeIEEMDDFKHHHFPISRIKRIIKSENNAIKLSAETPILFSKACELFVLELTLRSWFHAQQNNRGSLKKTDFAAAIRRTEV 171
                         79*****997779999*************************************************************************** PP

               NF-YC  89 fdflvdivprdel 101
                         fdfl d+vp+de+
  Solyc03g111450.1.1 172 FDFLADVVPEDEI 184
                         **********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.35E-2290190IPR009072Histone-fold
PfamPF008082.1E-11104166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.3E-26104181IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MENNDQQPME INQQQPMENN DQQAMEINQQ QPMENNDQQP MEINQQQPVE PLYPGYPFYQ  60
MLLHQQHQQL QLQLQQQVEE QMRIFWNCQR EEIEEMDDFK HHHFPISRIK RIIKSENNAI  120
KLSAETPILF SKACELFVLE LTLRSWFHAQ QNNRGSLKKT DFAAAIRRTE VFDFLADVVP  180
EDEINEVATG FGPGMVGPTV GGGFPYFYPP MGLLAMPGVM PGGPAMLGVM PGGPAMLGPM  240
PGGPAMPGPM IGGPSMPGPM IGGPAVAVVA PSVYVQPPLQ AWQPAGDNPN AGGESDGQGG  300
IFLLFLRSDE GNVFRRRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B8e-3489180394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g111450.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351461.11e-130PREDICTED: nuclear transcription factor Y subunit C-1-like
TrEMBLA0A3Q7FQY41e-177A0A3Q7FQY4_SOLLC; Uncharacterized protein
STRINGSolyc03g111450.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2082033
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.19e-43nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]