PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g110850.1.1
Common NameLOC101265223
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YC
Protein Properties Length: 164aa    MW: 18914.6 Da    PI: 5.1002
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g110850.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC119.51.5e-3733132297
               NF-YC   2 lksfwekq...iekatdfknhelP.larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         l++fw+++   +e++ dfk + lP + rikki+k+d+dv+mi++e+Pvll+kacelfi eltlrsw +aeen+rr lkk d+++++ +td+
  Solyc03g110850.1.1  33 LEMFWTDKrreMENVIDFKSNLLPrIHRIKKIMKTDKDVRMIATESPVLLAKACELFIQELTLRSWFKAEENHRRILKKDDVTDVIMETDT 123
                         899**988788************9899**************************************************************** PP

               NF-YC  89 fdflvdivp 97 
                          dfl+d+  
  Solyc03g110850.1.1 124 LDFLLDDDA 132
                         *****9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.16E-2134127IPR009072Histone-fold
PfamPF008085.4E-1658115IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.105.0E-2559129IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MENNYEKSAV NAGQSAAYPM LSPPHLEKKQ EKLEMFWTDK RREMENVIDF KSNLLPRIHR  60
IKKIMKTDKD VRMIATESPV LLAKACELFI QELTLRSWFK AEENHRRILK KDDVTDVIME  120
TDTLDFLLDD DANVTDGSTQ NVVPFYVAEG TMGVHTDNLD HQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C4e-234912936115HapE
4g92_C4e-234912936115HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236557.11e-120PREDICTED: nuclear transcription factor Y subunit C-1-like
SwissprotQ9SMP01e-37NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLK4BJU81e-120K4BJU8_SOLLC; Uncharacterized protein
STRINGSolyc03g110850.1.11e-119(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-33nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]