PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g095270.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 239aa    MW: 27491.2 Da    PI: 7.5367
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g095270.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-051638123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C  C+++F+++  L  H+ +H
  Solyc03g095270.1.1 16 YRCRFCNEVFTTSQGLAGHQTKH 38
                        9*******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.0E-51343No hitNo description
SMARTSM003550.00791638IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5751643IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MIYPSLLTRP AGSWCYRCRF CNEVFTTSQG LAGHQTKHRF EESWIKGAHH HKFFCPSADL  60
PLHCRYLGYL MPNPVVIHNQ EHLRHQHLRN PVVQSPQISL SDRRSIFDPL QQSVVSEIPP  120
QPQGHPQHGY LQMLQKHIMN QVNQQRAHQL PHGNKEQIPH VNAHEPITPT LNQNNIYAQH  180
LSQWDQFKIQ VMNGALAAKP LELTHSSIGS TSEVTTGWMC EKKNEDHEVE ELDLELRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g095270.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3Q7FP261e-178A0A3Q7FP26_SOLLC; Uncharacterized protein
STRINGSolyc03g095270.1.11e-178(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6643821
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]