PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g093870.1.1
Common NameLOC101246118
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 175aa    MW: 19939.1 Da    PI: 9.3053
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g093870.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46.1e-0680102123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cgk F +   L  H+r+H
  Solyc03g093870.1.1  80 HECSICGKKFATGQALGGHMRKH 102
                         78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551104059IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-74260IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.7E-673105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.61E-778105No hitNo description
PROSITE profilePS5015711.21980107IPR007087Zinc finger, C2H2
SMARTSM003550.002980102IPR015880Zinc finger, C2H2-like
PfamPF139123.8E-1180104IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MNMMLKRSKV EEESVEKFAM ANCADIMKRN ELLERPNLIF KCKKRFESFQ ALGGHMTSHK  60
NKLTTMSTNG ELLHVNLQKH ECSICGKKFA TGQALGGHMR KHQDELNQLE HKKKKKMKLD  120
ESLIKSGREL AEALNSKSDE LHDKLDLESS KRTLFLGLNL DLNLTIDENE LRTG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g093870.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235433.21e-122zinc finger protein ZAT11-like
TrEMBLA0A3Q7FLI41e-121A0A3Q7FLI4_SOLLC; Uncharacterized protein
STRINGSolyc03g093870.1.11e-121(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-18C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]