PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g046440.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 174aa    MW: 20277.6 Da    PI: 6.626
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g046440.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.13.8e-1370128563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         ++ rr+++NRe+ArrsR RK++ + eL   v  L +eN+ L ++l++ +k  +++  e+
  Solyc03g046440.1.1  70 RKKRRMISNRESARRSRMRKQKHLNELWAQVNCLRNENHLLLNKLNHVSKIHDQVLEEN 128
                         6789********************************************99998887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.7E-1366130IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.34668131IPR004827Basic-leucine zipper domain
PfamPF001703.2E-1170128IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.86E-1270119No hitNo description
Gene3DG3DSA:1.20.5.1707.9E-1170143No hitNo description
CDDcd147024.92E-1971122No hitNo description
PROSITE patternPS0003607388IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MQSTNVTELY YNPAQYNYTP TFHDQSINRI PSPLYHLQIG PPIQQLNSQS TYFNTNNSTC  60
DEIDELINER KKRRMISNRE SARRSRMRKQ KHLNELWAQV NCLRNENHLL LNKLNHVSKI  120
HDQVLEENAQ LKEETAGLRQ IVTNMHLMDG PNYPLKEIQL DDDEPCSGSS QNE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16990RKKRRMISNRESARRSRMRKQK
28289RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g046440.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068255.11e-127basic leucine zipper 43-like
TrEMBLA0A3Q7G6R21e-124A0A3Q7G6R2_SOLLC; Uncharacterized protein
STRINGSolyc03g046440.1.11e-126(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9472492
Representative plantOGRP31041129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.19e-32basic leucine-zipper 42
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]