PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g045030.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 184aa    MW: 21240.9 Da    PI: 10.7842
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g045030.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.72.1e-30751743100
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 
                         +++++  ki T++g+RdRR+Rls++ a++fFdLq+ LGfdk+skti+WL++ ++ a  elt+ s+ + ++   ++s s+s+++++ +k+++
  Solyc03g045030.1.1  75 KRERSCGKILTAQGPRDRRIRLSINMARKFFDLQELLGFDKPSKTIDWLFTHSELALEELTNWSTHQTHRPkISGSLSKSNQQQGFRKKSQ 165
                         4666778*******************************************************97666644443333333333333332222 PP

                 TCP  93 saa.kskks 100
                         +++ ++ k+
  Solyc03g045030.1.1 166 KSKrSNTKR 174
                         222122222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.02575134IPR017887Transcription factor TCP subgroup
PfamPF036342.6E-2881172IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MFSASNSSTH DNPLPHYISS SFHTSSPFLG FTGNQILLHQ YYQNQFSSHY YLAKNNEDYC  60
DNSLRSFPMK KKSKKRERSC GKILTAQGPR DRRIRLSINM ARKFFDLQEL LGFDKPSKTI  120
DWLFTHSELA LEELTNWSTH QTHRPKISGS LSKSNQQQGF RKKSQKSKRS NTKRVKEKGK  180
STS*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g045030.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM9210690.0Solanum lycopersicum CYCLOIDEA2 gene, partial sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010317815.11e-107transcription factor CYCLOIDEA
SwissprotQ9SBV63e-26CYCLD_ANTLN; Transcription factor CYCLOIDEA (Fragment)
TrEMBLK4BGB51e-132K4BGB5_SOLLC; Uncharacterized protein
STRINGSolyc03g045030.1.11e-133(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.18e-22TCP domain protein 12
Publications ? help Back to Top
  1. Vieira CP,Vieira J,Charlesworth D
    Evolution of the cycloidea gene family in Antirrhinum and Misopates.
    Mol. Biol. Evol., 1999. 16(11): p. 1474-83
    [PMID:10555278]
  2. Gubitz T,Caldwell A,Hudson A
    Rapid molecular evolution of CYCLOIDEA-like genes in Antirrhinum and its relatives.
    Mol. Biol. Evol., 2003. 20(9): p. 1537-44
    [PMID:12832647]
  3. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]