PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g043900.1.1
Common NameLOC101263881
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 204aa    MW: 23654.6 Da    PI: 9.7924
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g043900.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.82.3e-1386144563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         ++ +r+++NRe+ArrsR RK+  +e+L++ +  L+ eN++L ++++ ++ ++++ k ++
  Solyc03g043900.1.1  86 RKRKRMISNRESARRSRMRKQTHLENLRNQSNRLKLENRDLTNRIQLITGHYQQIKRNN 144
                         5789***************************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.7E-1077141No hitNo description
SMARTSM003382.8E-1282146IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.49684147IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.24E-1186138No hitNo description
PfamPF001704.6E-1186144IPR004827Basic-leucine zipper domain
CDDcd147022.01E-1887138No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MLSTILSSDG IFPNTFPSFY DDFTQWDCTE PTSTFPKQGV ELVFSPTQSP TPEPVISHDS  60
GSGFDKSKPD SPNDSPNSGT HDLAERKRKR MISNRESARR SRMRKQTHLE NLRNQSNRLK  120
LENRDLTNRI QLITGHYQQI KRNNEMLRAE SIFLQERLKG IRDLLITRQL QQQLYNSAFA  180
WPCNNLYVEQ RPHMINQPII NHQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198105RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g043900.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234711.11e-150bZIP transcription factor 11-like
TrEMBLA0A3Q7FJ801e-149A0A3Q7FJ80_SOLLC; Uncharacterized protein
STRINGSolyc03g043900.1.11e-150(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28202251
Representative plantOGRP8744815
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.12e-24basic leucine-zipper 5
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]