PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g007460.1.1
Common NameLOC101254274
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 397aa    MW: 43452.1 Da    PI: 4.3107
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g007460.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-19128177255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Solyc03g007460.1.1 128 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 177
                         89*******.**********82....35*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.9E-30127185IPR001471AP2/ERF domain
SMARTSM003801.7E-38128191IPR001471AP2/ERF domain
CDDcd000184.89E-33128184No hitNo description
SuperFamilySSF541711.18E-21128185IPR016177DNA-binding domain
PROSITE profilePS5103223.947128185IPR001471AP2/ERF domain
PfamPF008471.1E-12128177IPR001471AP2/ERF domain
PRINTSPR003674.7E-10129140IPR001471AP2/ERF domain
PRINTSPR003674.7E-10151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDYHSLCPIK YTEHRNVIRK VTKPSLVKSK KLSEAAKSSQ LNPSVPRTVR ISVTDPDATD  60
SSSDEEDLLF GRRRVKKYIN EISIETAVKC EVSSGNGKTV NKRAPEPLQT KQKPMKVQPP  120
PSAGAARKFR GVRQRPWGKW AAEIRDPARR VRLWLGTYDT AEEAAMVYDN AAIKLRGPDA  180
LTNFSTPAKA EPEPEPEPEP EISALSHSGY ESGNESRNIP SPTSVLRCTM SQSESGSGQV  240
HVSEECPSVQ GSMECEQTVQ PFVQCAAEPL IPSAIPQDVE ECQGETSMIP DYSSDYLPTD  300
IPFLNDFFNF DGSAAEQTLL EDSTMTAVTS TTTTTTPNEF GDLCNDSLDF GNDFLFNDAD  360
FAEFGSFDDL GDLGMDDFSQ DNSVVDYSSV DSLLAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21127184159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g007460.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234184.10.0ethylene-responsive transcription factor CRF4-like
TrEMBLA0A3Q7FG450.0A0A3Q7FG45_SOLLC; Uncharacterized protein
STRINGSolyc03g007460.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-61cytokinin response factor 4
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]