PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g005500.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 130aa    MW: 14822.2 Da    PI: 7.0722
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g005500.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19557256
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr ++ +g+++AeIrd  +++    r++lg+f +aeeAa+a+++a+ +++g+
  Solyc03g005500.1.1  5 KYRGVRKRP-WGKYAAEIRDtNRQG--GVRVWLGTFSSAEEAARAYDKAAYNMRGH 57
                        8********.**********33333..4**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-21565IPR016177DNA-binding domain
SMARTSM003803.2E-32570IPR001471AP2/ERF domain
PfamPF008471.4E-14557IPR001471AP2/ERF domain
PROSITE profilePS5103223.064564IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-29566IPR001471AP2/ERF domain
CDDcd000181.33E-27565No hitNo description
PRINTSPR003674.1E-11617IPR001471AP2/ERF domain
PRINTSPR003674.1E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MDEVKYRGVR KRPWGKYAAE IRDTNRQGGV RVWLGTFSSA EEAARAYDKA AYNMRGHLAI  60
LNFPEEYNLP RSSSHFYNNS SSMPSSSSSS NVHARNDQQG NRQVLELEYL DDHVLEELLD  120
CDQHANNRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-33511414114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc03g005500.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2401942e-07Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-118f23 map 10, complete sequence
GenBankAC2453452e-07Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-35f20 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886110.13e-93ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC53e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A3Q7G1317e-92A0A3Q7G131_SOLLC; Uncharacterized protein
STRINGSolyc03g005500.1.11e-92(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-29ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]