PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g094170.2.1
Common NameLOC101268333
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 255aa    MW: 28802.5 Da    PI: 9.0085
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g094170.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003396118223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +C+ C+++++++ +L  H +  H
  Solyc02g094170.2.1  96 SCSVCSRVYPTSRLLSIHVSEaH 118
                         6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.576893IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807093IPR007087Zinc finger, C2H2
SMARTSM003555.495118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097118IPR007087Zinc finger, C2H2
SMARTSM003550.45133158IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280135158IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAMEFDRQIE LGFPFWSPTR RRFGPDDPFF AYGNIQRELL AKQVALDLTE EENQLVQNSI  60
TDDEISNLFC PIIGCGAQMK NLDDFEDHYV TRHTASCSVC SRVYPTSRLL SIHVSEAHDS  120
FFQAKAARGF PMYECLVEGC DIKLKSYKSR QQHLVDKHKF PASYEFFRKA RPSKKQRLKP  180
HHKQASNKTQ EKSSAMQVEE ETIDNLVSAV SKLTTSDSPS AISFGRSRAR GLSFVPRAVN  240
RQRGPVTSTG GTKN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.20520.0cell culture| fruit| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g094170.2.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154180.0Solanum lycopersicum chromosome 2 clone C02HBa0204A09, complete sequence
GenBankAC2154570.0Solanum lycopersicum chromosome 2 clone C02SLe0061K08, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231779.10.0zinc finger protein 511
TrEMBLA0A3Q7FEC80.0A0A3Q7FEC8_SOLLC; Uncharacterized protein
STRINGSolyc02g094170.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102112022
Representative plantOGRP75381313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-106zinc ion binding;nucleic acid binding;zinc ion binding
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]