PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g093280.2.1
Common NameLOC101266791
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 379aa    MW: 41871.5 Da    PI: 4.8002
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g093280.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.2e-16146192455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Solyc02g093280.2.1 146 VHNLSEKRRRSRINEKMKALQKLIPNS-----NKTDKASMLDEAIEYLKQLQ 192
                         6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-20139202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-19139202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.30E-17145196No hitNo description
PfamPF000101.8E-13146192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-18148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MANNNVYYHN ANFSLTDPDP EPDDISVFLR HILLPSSSSS SSSSNFMALK SNEMQYSSSL  60
PHLMPNNNQQ GNLSSMMNSS ACGIFSSSYG VCNGATTVSS SSVGTIDYDP DEYECESEDG  120
TEDLGAEASV QPPSRNTSKR SRAAEVHNLS EKRRRSRINE KMKALQKLIP NSNKTDKASM  180
LDEAIEYLKQ LQLQVQMLTM RNGLNMYPLG LPRMLQQNQL SHQKVGLCEG NAFTNAKVAG  240
NLQVNQDASL NAIFNPTENC TETKVTPPIT MSNINRSDSA FELESSMNIH LDPFQLSRST  300
SKEIWREDDL PLYGMNELTT KTASTGSNLA FSVPLDTDAS NLKRSTREAC LLRYQFGAVN  360
ETNLDCDQLL SQQLYSNF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.102260.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO74112100.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153730.0Solanum lycopersicum chromosome 2 clone C02HBa0064B17, complete sequence
GenBankAC2154800.0Solanum lycopersicum chromosome 2 clone C02SLm0055O24, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010315963.10.0PREDICTED: transcription factor SPATULA isoform X1
SwissprotQ9FUA41e-43SPT_ARATH; Transcription factor SPATULA
TrEMBLK4BDC40.0K4BDC4_SOLLC; Uncharacterized protein
STRINGSolyc02g093280.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98502227
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-44bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]