PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g092170.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 85aa    MW: 9761.14 Da    PI: 8.9713
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g092170.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.91.6e-133377145
                FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeek 45
                        kfY +YA++ GFsvrk++ ++s+++++i+ ++fvCskeg+r ++ 
  Solyc02g092170.1.1 33 KFYLDYAHRNGFSVRKNRISRSRKDKSIIGQEFVCSKEGFRLKKC 77
                        6***************************************98875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-113377IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MNAVVSFVPQ LGEQELREPY IGMEFQSLDT GFKFYLDYAH RNGFSVRKNR ISRSRKDKSI  60
IGQEFVCSKE GFRLKKCNQA CNCD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g092170.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2265021e-142Solanum lycopersicum chromosome 2 clone C02HBa0030E13, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068484.13e-47protein FAR1-RELATED SEQUENCE 5
RefseqXP_025884696.16e-49protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_025884722.14e-48protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025884850.13e-47protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025888960.15e-46protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A3Q7IST42e-54A0A3Q7IST4_SOLLC; Uncharacterized protein
TrEMBLV9GZJ36e-56V9GZJ3_SOLLC; Uncharacterized protein
STRINGSolyc02g092170.1.11e-56(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA645860
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-16FAR1 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Young RJ,Francis DM,St Clair DA,Taylor BH
    A dispersed family of repetitive DNA sequences exhibits characteristics of a transposable element in the genus Lycopersicon.
    Genetics, 1994. 137(2): p. 581-8
    [PMID:7503823]