PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g092090.1.1
Common NameLOC104645678
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 215aa    MW: 24816.6 Da    PI: 10.5749
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g092090.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.35.2e-11114169560
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                         ++ rr+ +NRe+ArrsR RK++ +e+L++ +  L+  N++  ++l  ++ +++ ++
  Solyc02g092090.1.1 114 RKRRRMVSNRESARRSRMRKQKHLENLRNQANRLKVGNREIMNRLRLITHQCQVVQ 169
                         6789999******************************************9999666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-11110174IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.036112175IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.84E-10114165No hitNo description
Gene3DG3DSA:1.20.5.1704.1E-7114166No hitNo description
PfamPF001707.8E-8114167IPR004827Basic-leucine zipper domain
CDDcd147021.21E-15115166No hitNo description
PROSITE patternPS000360117132IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MLSTFPATTL SADGLFSNLF PAFDGGFTPW ECIEPAFLFS QQVESVVSPK ESPPPEPVIS  60
NSDSGSDDSK PNSVHSSSGS DDPNRNNNNN NKSNRCPDER KRQRTTSNRD MDERKRRRMV  120
SNRESARRSR MRKQKHLENL RNQANRLKVG NREIMNRLRL ITHQCQVVQC ENERLRTESA  180
ILRQRLEGIR QIWINRQFNS YSAWACNNME QRPH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199117RKRQRTTSNRDMDERKRRR
2113117RKRRR
3113134RKRRRMVSNRESARRSRMRKQK
4126133RRSRMRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.84300.0callus| fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g092090.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010316032.11e-157bZIP transcription factor 2
TrEMBLM1BXK21e-117M1BXK2_SOLTU; Uncharacterized protein
STRINGSolyc02g092090.1.11e-156(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28202251
Representative plantOGRP8744815
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37730.12e-28basic leucine-zipper 7
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]