PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g089020.1.1
Common NameTCP5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 285aa    MW: 31895.3 Da    PI: 7.1599
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g089020.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.46.5e-3145170289
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................... 65 
                          g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak +i+el+ +                           
  Solyc02g089020.1.1  45 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKNEIDELPPLqippgslnpnlypmlgnapqittnkeg 135
                         689*************************************************************555555555555555433333333333 PP

                 TCP  66 .......ssssaseceaesssssasnsssg.........................k 89 
                                                      +                         +
  Solyc02g089020.1.1 136 rinwdnnI---------------------PleppnnnalgynpnffkwdpsnlslA 170
                         32222220.....................144444444445455555544333322 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.35347105IPR017887Transcription factor TCP subgroup
PfamPF036342.0E-2747110IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MITREEKGNV VNDDGNKSKA CTTSTSTTSW TRLKDPRIVR VSRAFGGKDR HSKVCTVRGL  60
RDRRVRLSVP TAIQLYDLQD RLGLNQPSKV VDWLLDAAKN EIDELPPLQI PPGSLNPNLY  120
PMLGNAPQIT TNKEGRINWD NNIPLEPPNN NALGYNPNFF KWDPSNLSLA HSENSLSHQH  180
DHHQNFNLMS SMPLTSHHQP VVYPPGLPQF FHQHNNNINV GASSSSEFDP KEINFQMLSN  240
NSGSENPLST STNSFRHSID STNQSIRPFH FLPSQNCDDT EPSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1952106155Putative transcription factor PCF6
5zkt_B3e-1952106155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.135330.0flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g089020.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDSolyc02g089020.1, Solyc02g089830.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4963230.0Solanum lycopersicum TCP transcription factor 5 (TCP5) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233792.10.0TCP transcription factor 5
TrEMBLG3BGU50.0G3BGU5_SOLLC; TCP transcription factor 5
STRINGSolyc02g089020.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08070.12e-46TCP domain protein 17
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Parapunova V, et al.
    Identification, cloning and characterization of the tomato TCP transcription factor family.
    BMC Plant Biol., 2014. 14: p. 157
    [PMID:24903607]