PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g088670.1.1
Common NameLOC101264589
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 461aa    MW: 50937.2 Da    PI: 5.7356
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g088670.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.8e-06119139323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C+ Cgk F++   L  H+rtH
  Solyc02g088670.1.1 119 CKECGKEFPSMKALAGHLRTH 139
                         ********************9 PP

2zf-C2H2157.4e-05148170123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C++Cgk F +   L  H+++H
  Solyc02g088670.1.1 148 HICEKCGKGFVSMRALFGHMKVH 170
                         68*******************99 PP

3zf-C2H214.20.00013377399123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kCp+C+k+F++  +L  H r H
  Solyc02g088670.1.1 377 HKCPICSKVFPSGQSLGGHKRAH 399
                         79**************9999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.085931IPR015880Zinc finger, C2H2-like
PfamPF139126.5E-4932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.0085117139IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97117144IPR007087Zinc finger, C2H2
SuperFamilySSF576678.87E-11118170No hitNo description
PfamPF139125.2E-8118141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-5119147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.907148175IPR007087Zinc finger, C2H2
SMARTSM003550.0015148170IPR015880Zinc finger, C2H2-like
PfamPF139120.001148172IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-4148171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
SuperFamilySSF576671.44E-5373401No hitNo description
PfamPF139121.0E-12376400IPR007087Zinc finger, C2H2
SMARTSM003550.016377399IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764377399IPR007087Zinc finger, C2H2
PROSITE patternPS000280379399IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MEEPQGHKFI CKFCDKSCDS GKSLGGHMRG HLALISAAKN QKEEADGKMG SQEEEEAANT  60
HEDLSISGQS DGSMNQEKEN NISIGDDGDS VGYSLRENPR KSWRVSDLKI CSLETTNICK  120
ECGKEFPSMK ALAGHLRTHS KKGMEKCHIC EKCGKGFVSM RALFGHMKVH SKRLRVDNQD  180
SESKQSLSDF DTVCPIRKKR SKIKYKMDAS SSFSGLNESS SAISEVDEME EAARCLMMLS  240
SGVTDWDEYI SISENSTNEN VILESESLHC AKGISADAFT VKHLSHTVFS DSGCVDGYEK  300
NYEIAEFSDR LMLINTEITK VCYSTEMQFE NDPSSSVVMQ DLAFLNSCSV KNAGLNMGNS  360
QLGEIRTSPD PIKSKVHKCP ICSKVFPSGQ SLGGHKRAHY TGFTESKTKE TMVKKLDDVA  420
DNHKSFFDLN NPVIAMDGEE KDVELKLWWV ESGDALMMSS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g088670.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154760.0Solanum lycopersicum chromosome 2 clone C02SLm0025E22, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233667.10.0zinc finger protein ZAT1-like
TrEMBLA0A3Q7FX210.0A0A3Q7FX21_SOLLC; Uncharacterized protein
STRINGSolyc02g088670.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Representative plantOGRP1487534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-20C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]