PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g087310.2.1
Common NameLOC101264581
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family E2F/DP
Protein Properties Length: 375aa    MW: 42155.4 Da    PI: 9.0499
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g087310.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP763.7e-242086171
             E2F_TDP  1 rkeksLrlltqkflklleksee.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                        rk+ksL+ll+++flkl+ ++    ++ l+++a++L    v  +rRRiYDi+N+Le+++++++k+kn++rw+g
  Solyc02g087310.2.1 20 RKDKSLGLLCSNFLKLCDREGVdSTIGLDNAADQL---GV--ERRRIYDIVNILESVGVLSRKAKNQYRWNG 86
                        79*****************9888************...**..****************************98 PP

2E2F_TDP70.81.5e-22143222170
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70 
                         rkeksL +l+q+f+kl+++s+ + ++l+++a++L+ +      +k+k RR+YDi+NV+ ++nliek     + k+ +rw+
  Solyc02g087310.2.1 143 RKEKSLMILAQNFVKLFHCSDVDLISLDKAASALLGDvhdpmAMKTKTRRLYDIANVFVSMNLIEKirspdNGKPVFRWI 222
                         79****************************************************************99999999999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.0E-251888IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.7E-141984IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-272086IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.0E-212186IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.3E-19140223IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.3E-23143223IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.5E-17144222IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.64E-11145222IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MSSSLHTEDS QWKNPSIYSR KDKSLGLLCS NFLKLCDREG VDSTIGLDNA ADQLGVERRR  60
IYDIVNILES VGVLSRKAKN QYRWNGYNAI SKAVDLLKKE GLKDLSTVSS TCHNVSNVIA  120
CNNSDVKEKG EGKTAGSHKI DNRKEKSLMI LAQNFVKLFH CSDVDLISLD KAASALLGDV  180
HDPMAMKTKT RRLYDIANVF VSMNLIEKIR SPDNGKPVFR WIAWKENLRS GSLASAKSDD  240
STRRTFGAEI TNTTPKRYRD DSSSDVMSNG QVKRLKVAKD DELKDKKQEI STEQLNERGT  300
KDFVFGPFGP SSLPRSGISG KENLKQIQNW EDLASKYHPQ YQNKAANELF AHYVEAWESW  360
QVEAANELHK QHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A6e-34192093222Transcription factor E2F8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.252240.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154130.0Solanum lycopersicum chromosome 2 clone C02HBa0189G15, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232256.10.0PREDICTED: E2F transcription factor-like E2FF isoform X1
TrEMBLK4BBN80.0K4BBN8_SOLLC; Uncharacterized protein
STRINGSolyc02g087310.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25222457
Representative plantOGRP24741634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.16e-93DP-E2F-like protein 3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]