PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g085910.2.1
Common NameLOC101244335
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 272aa    MW: 29433.4 Da    PI: 8.0547
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g085910.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.85.2e-314107199
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++q
  Solyc02g085910.2.1   4 SCNGCRVLRKGCSESCSIRPCLqwiktPDSQSNATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWQ 94 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallke 99 
                         l+q ++e++l ++
  Solyc02g085910.2.1  95 LCQNAVEAVLKGT 107
                         ******9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381551.9E-871270IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.7663109IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLQWIKT PDSQSNATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQNAV EAVLKGTPIT PIASEIAVNN  120
NGPPLKLPYD IRHINKDENS TKSSELHRVR TRCRFKRSGA NTKAKNSNPV CSGSGDELAH  180
EKMNGSTSHE SSLSHQSEEE AAAAAAVAMN VECDSSGMAE VEDSAKDVEL ELTLGFSSLG  240
TVDSKPKETK RNKDVQLVNG AGECKIELRL H*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.127730.0cell culture| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g085910.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001334838.10.0LOB domain-containing protein 40
SwissprotQ9M8864e-90LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A3Q7F9Y30.0A0A3Q7F9Y3_SOLLC; Uncharacterized protein
STRINGSolyc02g085910.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-88LOB domain-containing protein 41
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]