PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g085190.1.1
Common NameLOC101258225
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 253aa    MW: 27896.7 Da    PI: 8.438
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g085190.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-20131165135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Solyc02g085190.1.1 131 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 165
                         ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.89125161IPR000679Zinc finger, GATA-type
SMARTSM004013.6E-19125177IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-13128166No hitNo description
Gene3DG3DSA:3.30.50.103.5E-17129165IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.73E-13130162No hitNo description
PfamPF003205.8E-18131165IPR000679Zinc finger, GATA-type
PROSITE patternPS003440131156IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MMHRCSGSMV GPCSCGLFHN QSGSSGTTTS SAFSMLFSHE YSENMYSSSS SNVDCTLSLG  60
TPSTRLINED NHEKRSSVYS KHERLRSSSN CISNFWDILH PKQHVTTPQY KSTRGANNNS  120
TTTDPLVARR CANCDTTSTP LWRNGPRGPK SLCNACGIRF KKEERRASAA AATANGGGGA  180
ETTTHQHWVH HHHHSQPTKM ACFSSASYGN EFRFIEDNEH HRDSDAAATA IPFFPWRLNV  240
ADRPSLVHDF TR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153630.0Solanum lycopersicum chromosome 2 clone C02HBa0030A21, complete sequence
GenBankAC2153780.0Solanum lycopersicum chromosome 2 clone C02HBa0074A14, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233721.10.0PREDICTED: GATA transcription factor 19
SwissprotQ8LC792e-61GAT18_ARATH; GATA transcription factor 18
TrEMBLK4BB320.0K4BB32_SOLLC; Uncharacterized protein
STRINGSolyc02g085190.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
AsteridsOGEA38182346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.12e-49GATA family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]