PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g083950.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WOX
Protein Properties Length: 273aa    MW: 31031.2 Da    PI: 6.842
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g083950.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.8e-202585357
                        --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        +R+t+t++q+++L++l+++   r p+ae+++++++kl    +++ ++V++WFqN++a+e++
  Solyc02g083950.2.1 25 SRWTPTSDQIRILKDLYYNngVRSPTAEQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 85
                        8*****************8678*************************************97 PP

2Wus_type_Homeobox113.97.9e-372387265
   Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        +++RWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  Solyc02g083950.2.1 23 SSSRWTPTSDQIRILKDLYYnNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 87
                        789***************9779*****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-111789IPR009057Homeodomain-like
PROSITE profilePS5007110.5922086IPR001356Homeobox domain
SMARTSM003891.7E-62290IPR001356Homeobox domain
PfamPF000461.2E-172585IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.9E-82585IPR009057Homeodomain-like
CDDcd000862.69E-72687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEHQHNIEDG GKNSNNSFLC RQSSSRWTPT SDQIRILKDL YYNNGVRSPT AEQIQRISAK  60
LRQYGKIEGK NVFYWFQNHK ARERQKKRLI AAASATDNNN ISSMQMIPHL WRSPDDHHKY  120
NTTTTNPGVQ CPSPSSHGVL PVVQTGNYGY GTLAMEKSFR ECSISPPGGS YHQNLTWVGV  180
DPYNNMSTTS PATYPFLEKS NNKHYEETLD EEQEEENYQR GNSALETLSL FPMHEENIIS  240
NFCIKHHESS GGWYHSDNNN LAALELTLNS FP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central zone of the active shoot meristem. {ECO:0000269|PubMed:12874128}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g083950.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5383290.0Lycopersicon esculentum mRNA for wuschel protein (wus gene)
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234015.20.0protein WUSCHEL
SwissprotQ84VT70.0WUS_SOLLC; Protein WUSCHEL
TrEMBLA0A3Q7F7V40.0A0A3Q7F7V4_SOLLC; Uncharacterized protein
TrEMBLF6LIE30.0F6LIE3_SOLLC; Wuschel
STRINGSolyc02g083950.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331
Representative plantOGRP90871114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.14e-39WOX family protein
Publications ? help Back to Top
  1. Reinhardt D,Frenz M,Mandel T,Kuhlemeier C
    Microsurgical and laser ablation analysis of interactions between the zones and layers of the tomato shoot apical meristem.
    Development, 2003. 130(17): p. 4073-83
    [PMID:12874128]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Mu
    Increase in tomato locule number is controlled by two single-nucleotide polymorphisms located near WUSCHEL.
    Plant Physiol., 2011. 156(4): p. 2244-54
    [PMID:21673133]