PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g083750.1.1
Common NameLOC101262473
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 422aa    MW: 46854 Da    PI: 4.4612
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g083750.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573113.51.3e-35116217197
              DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdq 86 
                         klfqrlw +eDei lLqG++++++++g      + ++d+ afy+++k++++++++k+qlveK+rrLKkK+++ ++k+ sgke++f+++hdq
  Solyc02g083750.1.1 116 KLFQRLWMDEDEIELLQGFLEYTTQRGGinsssHHHHDTGAFYDQIKNKLQLDFNKNQLVEKLRRLKKKYRTVMSKMGSGKEFVFKSPHDQ 206
                         579***********************987764334459***************************************************** PP

              DUF573  87 kifelskkiWg 97 
                          +fe+s+kiW 
  Solyc02g083750.1.1 207 ATFEISRKIWS 217
                         **********6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.5E-33118217IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MASVEDQAVV YNDDDLDDEE DDEESGHPQN EAVVDEDDDV DVDEEEEEED DSTSSPPVPV  60
ANHSVAGEVT IAVVGVPATD SLCIEPKRER INDFGVTPAT MVVEEKKPLV LDDSRKLFQR  120
LWMDEDEIEL LQGFLEYTTQ RGGINSSSHH HHDTGAFYDQ IKNKLQLDFN KNQLVEKLRR  180
LKKKYRTVMS KMGSGKEFVF KSPHDQATFE ISRKIWSNAG PIVVRSSGPP PPPPADDGGF  240
DDEDSHLNLN HANFIDHTPN FNLNPNGFDV KTSKSKKRPR GGEEKPGYIQ QYYHQSSGGG  300
TNVILPPTPV SMAAPQATAT ATAAASIPSL IEETVRSCLS PIFKELFNNL NGSRYSGFGM  360
SLGPSPLVGF GNSLMSCDIN MKTDEKWRKQ QILELEVYSK RLELVQDQIK AQLEELRSMN  420
S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.135260.0flower| fruit| leaf| root| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153520.0Solanum lycopersicum chromosome 2 clone C02HBa0009K06, complete sequence
GenBankAC2153700.0Solanum lycopersicum chromosome 2 clone C02HBa0056D15, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232499.10.0PREDICTED: mediator-associated protein 1
TrEMBLK4BAP30.0K4BAP3_SOLLC; Uncharacterized protein
STRINGSolyc02g083750.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Representative plantOGRP31841028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-73DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]