PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g081780.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 294aa    MW: 33860.1 Da    PI: 9.7283
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g081780.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.63e-10251001795
                         E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3  17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         ++p  f++e+  ++ k++   l  +de g  We k+  +k+ + ++ ++ W +Fv  ++Lk+gD+++F l+++s f  +v+
  Solyc02g081780.1.1  25 MMPSCFIKENkkMLTKAC---LLKTDEAGMLWEAKIVREKSNNYFICEGEWPQFVVHHQLKQGDVLLFFLVEKSVF--HVH 100
                         679999999954444444...34477**********76666666888888*******************9987887..544 PP

2B333.48e-112042751387
                         TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3  13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +  +++pk+fa+  g+ + ++  +++ + e+   W+v++     sg++ +tkGW  F   n++  gD++ Fkl++ 
  Solyc02g081780.1.1 204 KTFMTIPKRFAKMTGIFSMKN--MKVVNeEKKGYWRVEI--VDMSGTIRITKGWAAFRTYNKIVCGDSCRFKLIKP 275
                         3459*******8887665555..55445377799*****..99999**************************9873 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-134105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-136106IPR015300DNA-binding pseudobarrel domain
CDDcd100172.11E-109100No hitNo description
SMARTSM010193.6E-611109IPR003340B3 DNA binding domain
PfamPF023629.0E-82597IPR003340B3 DNA binding domain
PROSITE profilePS5086311.36426105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-15187282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-16189283IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.953192286IPR003340B3 DNA binding domain
CDDcd100176.83E-8193277No hitNo description
SMARTSM010190.0012195286IPR003340B3 DNA binding domain
PfamPF023622.9E-8203275IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MLMDSDNTPA FCKLLQFGEV FISKMMPSCF IKENKKMLTK ACLLKTDEAG MLWEAKIVRE  60
KSNNYFICEG EWPQFVVHHQ LKQGDVLLFF LVEKSVFHVH PYTRKCRRNI RDEKKKLFYQ  120
QLSSTSSSSS SEEVEIGPDR KVNSTDEESV DEDDSPCYKN PKQENLSDDG GGGNGSKKFR  180
GGSSMMNFKT DHPYYEMVVK RSHKTFMTIP KRFAKMTGIF SMKNMKVVNE EKKGYWRVEI  240
VDMSGTIRIT KGWAAFRTYN KIVCGDSCRF KLIKPNTLQV QKVPKHASLK SYH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g081780.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154750.0Solanum lycopersicum chromosome 2 clone C02SLm0021D12, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065617.20.0B3 domain-containing protein At5g18000-like
TrEMBLA0A3Q7F6H30.0A0A3Q7F6H3_SOLLC; Uncharacterized protein
STRINGSolyc02g081780.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48881327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.13e-09VERDANDI
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]