PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g080710.1.1
Common NameLOC104645796
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 360aa    MW: 40617 Da    PI: 8.9659
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g080710.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like35.42.4e-114064226
             G2-like  2 prlrWtpeLHerFveaveqLGGsek 26
                        prlrWt++LH+rFv av++LGG+++
  Solyc02g080710.1.1 40 PRLRWTHDLHRRFVYAVDHLGGIDR 64
                        8*********************987 PP

2G2-like94.86.9e-30100153255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         prlrW  +LH+rFv av++LGG ++AtPk +l++m+vkgLt++h+kSHLQ+YR+
  Solyc02g080710.1.1 100 PRLRWIDDLHRRFVYAVDHLGGVNRATPKMVLQIMDVKGLTVSHIKSHLQMYRS 153
                         8****************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-93664IPR009057Homeodomain-like
PROSITE profilePS5129411.09496156IPR017930Myb domain
SuperFamilySSF466894.84E-1398154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-2798154IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-22100153IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MKKGLEFSEN SPSLSMELGY RSNDKSSEFS IRAYVKSTMP RLRWTHDLHR RFVYAVDHLG  60
GIDRLEFSED SPSLSMELGN NSSDKTSKFA IRAYVKPRIP RLRWIDDLHR RFVYAVDHLG  120
GVNRATPKMV LQIMDVKGLT VSHIKSHLQM YRSLKHQEMQ ALAANGRKRN RIDCSDSMNI  180
PRGNLVHRYN HINGKAAVID GSDQMNFPQG NLVNGYNHIK GKAAMFDGSD QMNFPQGNLV  240
HCYNHNNGKS VFDGHLNPTV TTNYLDKIAS SSTVFPPPWI PMPEKKMGLE GRCYIFRDFF  300
DGTITIRNGE DDNKIVRAYG ISNLPNESAT SMIEEENSHS TMSLELSLSS DISLDLTLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16101157460Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16101157460Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16101156358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16101156358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16101156358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16101156358Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16101157460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16101157460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16101157460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16101157460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16101157460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16101157460Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g080710.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154071e-119Solanum lycopersicum chromosome 2 clone C02HBa0167J21, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010316586.10.0uncharacterized protein LOC104645796
TrEMBLA0A3Q7F7990.0A0A3Q7F799_SOLLC; Uncharacterized protein
STRINGSolyc02g080710.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13843412
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.14e-26G2-like family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]