PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g080680.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 230aa    MW: 25774.2 Da    PI: 9.1953
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g080680.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like34.45e-112253255
             G2-like 32 ilelmkvkgLtlehvkSHLQkYRl 55
                        +l++m+vkg+t++h+kSHLQ+YR+
  Solyc02g080680.1.1  2 VLQIMNVKGVTISHIKSHLQMYRS 25
                        89*********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-10226IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVLQIMNVKG VTISHIKSHL QMYRSLKHQE MQAEAANGRK RNRIDGADSM NNPRANLVHC  60
YNHINGKAAV VDGSDQMNFP QGNLVNGYNH IKGKATMFDG SDQMNFPQGN LVHCYNHNNG  120
KAPIFNGSNQ MNFPQGNLVH CYNHNNGKAP IFNGSNQMNF PQENLVHRYN HNNGKSVFDG  180
HLNPTVTTNY LEKIASSSTV FPPPWMEMMI IKSCEHMVLA VCQIRVQLQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g080680.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154070.0Solanum lycopersicum chromosome 2 clone C02HBa0167J21, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027770015.11e-101two-component response regulator ORR24-like
TrEMBLA0A3Q7F5U91e-147A0A3Q7F5U9_SOLLC; Uncharacterized protein
STRINGSolyc02g080680.1.11e-170(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2686322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42660.15e-09G2-like family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]