PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g078130.2.1
Common NameLOC101247399
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 197aa    MW: 21998.9 Da    PI: 8.2657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g078130.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.82.9e-112270655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHHH CS
                 HLH  6 nerErrRRdriNsafeeLrellPkaskapskK..lsKaeiLekAveYIksLq 55
                        + +E++RR+++++ + +L +l+ ++   +++K  ls  + Le+A +YIk+Lq
  Solyc02g078130.2.1 22 KTIEKNRRNQMKDLYMKLNSLVHHD---QHTKefLSLPDQLEEAANYIKKLQ 70
                        689*********************8...666669*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.5021669IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-82092IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-82270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-92290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.86E-52474No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0050832Biological Processdefense response to fungus
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEQQYCSNKP SSSSSCKAAD RKTIEKNRRN QMKDLYMKLN SLVHHDQHTK EFLSLPDQLE  60
EAANYIKKLQ IDLEKMRLKK EALTATAGTL NSNSNSSSNT DGRTLENTLP LPHIDIHNVN  120
SALEVLLITG YDYHFMFNHI IRMLHEDGVQ IISANYTLVG HTIFHSIHSK VGESATSSTA  180
KIISEKLKQF VGAAAT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g078130.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233835.11e-144transcription factor bHLH162
TrEMBLA0A3Q7F4E71e-143A0A3Q7F4E7_SOLLC; Uncharacterized protein
STRINGSolyc02g078130.2.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51052131
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.17e-38bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]